PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00555.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 498aa    MW: 54535.1 Da    PI: 10.7673
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00555.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1172.3e-36161289289
                      TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec..eae 76 
                              +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++            sa ++  + +
  Sme2.5_00555.1_g00005.1 161 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELpawkptigsA--SAAATntNLD 244
                              79**************************************************************8888866431..2212222222 PP

                      TCP  77 sssssasnsssg................................k 89 
                              +++ +++++ s+                                +
  Sme2.5_00555.1_g00005.1 245 QEQAQKQQEDSNfafqqgnaslfdnvagpsskrametnssamqfH 289
                              222222222222445555555555555444433322222222221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-33161307IPR005333Transcription factor, TCP
PROSITE profilePS5136934.543163221IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MAESFRFQSG ARYRRRRTIQ KRKLKCNQSK AGKRKAEQGS ESGSSEESTP PPSSSSSSSS  60
SSQSKPESRS WQRRRRKSRT IRKRTPTLST SSTTSISSSP SVALWKPSPK KRSYLPSSSS  120
LGQNVEHATL RGKMGETSRL GLRNTVGEIV EVQGGHIVRS TGRKDRHSKV CTAKGPRDRR  180
VRLSAHTAIQ FYDVQDRLGY DRPSKAVDWL IKKAKPAIDE LAELPAWKPT IGSASAAATN  240
TNLDQEQAQK QQEDSNFAFQ QGNASLFDNV AGPSSKRAME TNSSAMQFHS FQESHLLSRT  300
NSQNQDLSLS LQFQDPILLH HQNQQAQHHN QREQEQVQVQ APAHFTGNTP LGFGPSGWSM  360
HQRLSSWSDS RDNAPSGSGG AVTGASGYLF NSPPAPALLQ HLFGQNQFFS QRGPLQSSNT  420
SSVRAMMDPS TIAIASGDPS HHHQAVLPMY PSSIPGYGFA SEVGGFSGFR IPARIQGEEE  480
EHDGISDKPS SASSDSRH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2108760.0HM210876.1 Solanum melongena lanceolate gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348284.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR54e-82TCP4_ARATH; Transcription factor TCP4
TrEMBLE2FYM20.0E2FYM2_SOLME; Lanceolate
STRINGPGSC0003DMT4000322680.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.38e-75TCP family protein